Variant report

Variant	rs72942434
Chromosome Location	chr2:113699807-113699808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17042602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042612	1.00[AMR][1000 genomes]
rs17042614	1.00[AMR][1000 genomes]
rs56826756	1.00[AMR][1000 genomes]
rs57318387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57413143	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6710558	1.00[AMR][1000 genomes]
rs6749946	1.00[AMR][1000 genomes]
rs72942428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942441	1.00[AMR][1000 genomes]
rs72942447	1.00[AMR][1000 genomes]
rs72942449	1.00[AMR][1000 genomes]
rs72942450	1.00[AMR][1000 genomes]
rs72942454	1.00[AMR][1000 genomes]
rs72942456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv979388	chr2:113696105-113705504	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113697600-113700400	Enhancers	Colon Smooth Muscle	Colon
2	chr2:113698200-113700000	Enhancers	Stomach Mucosa	stomach
3	chr2:113699000-113700800	Enhancers	NHEK	skin
4	chr2:113699000-113701000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:113699200-113700000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr2:113699200-113700600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:113699200-113700600	Enhancers	HMEC	breast
8	chr2:113699400-113700400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:113699400-113700400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:113699600-113700400	Enhancers	Fetal Intestine Small	intestine
11	chr2:113699600-113700400	Enhancers	Gastric	stomach
12	chr2:113699600-113700600	Enhancers	HepG2	liver
13	chr2:113699800-113702400	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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