Variant report

Variant	rs72942581
Chromosome Location	chr4:84749138-84749139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10031143	0.96[ASN][1000 genomes]
rs17007384	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17007399	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17007412	0.96[ASN][1000 genomes]
rs2046731	0.84[ASN][1000 genomes]
rs4478182	0.84[ASN][1000 genomes]
rs56402863	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59951019	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72935222	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72935226	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84747800-84749200	Enhancers	Fetal Intestine Large	intestine
2	chr4:84748800-84749200	Enhancers	Fetal Intestine Small	intestine
3	chr4:84749000-84749400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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