Variant report

Variant	rs72944670
Chromosome Location	chr3:113875513-113875514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72944693	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954678	1.00[AMR][1000 genomes]
rs72954683	1.00[AMR][1000 genomes]
rs7637768	1.00[AMR][1000 genomes]
rs9917839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv948596	chr3:113852666-114434158	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3447208	chr3:113853785-113995233	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113872000-113876000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:113872000-113876200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:113872000-113876200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:113872000-113876200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:113872800-113877600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:113873200-113875600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:113874800-113876200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:113874800-113877800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:113874800-113878600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:113875000-113877200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:113875000-113877200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:113875200-113877400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:113875200-113877400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:113875200-113877800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:113875400-113877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:113875400-113877200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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