Variant report

Variant	rs72945773
Chromosome Location	chr4:147974829-147974830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1437271	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1437272	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1437275	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57066249	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943863	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943865	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945750	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147971600-147978400	Weak transcription	Aorta	Aorta
2	chr4:147971600-147978400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:147972200-147978000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:147972400-147978600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:147972800-147975600	Weak transcription	Fetal Lung	lung
6	chr4:147973400-147978200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:147973800-147978000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:147974000-147977600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:147974000-147978200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:147974000-147978200	Weak transcription	HMEC	breast
11	chr4:147974000-147978200	Weak transcription	NHEK	skin
12	chr4:147974400-147976800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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