Variant report

Variant	rs72945942
Chromosome Location	chr11:84894161-84894162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56350458	1.00[AFR][1000 genomes]
rs72950187	1.00[AFR][1000 genomes]
rs72957784	1.00[AFR][1000 genomes]
rs72959759	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72961523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84892600-84894400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:84892800-84894400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:84892800-84894400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:84893000-84894400	Enhancers	Brain Angular Gyrus	brain
5	chr11:84893200-84894200	Enhancers	Brain Anterior Caudate	brain
6	chr11:84893200-84894400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:84893200-84894600	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:84893400-84894400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:84893400-84894400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:84893400-84894800	Enhancers	Fetal Brain Male	brain
11	chr11:84893600-84894200	Enhancers	Brain Hippocampus Middle	brain
12	chr11:84893600-84894400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:84893800-84894200	Enhancers	Fetal Lung	lung
14	chr11:84893800-84894400	Enhancers	Fetal Intestine Large	intestine
15	chr11:84894000-84894400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:84894000-84894400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:84894000-84894400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:84894000-84895000	Weak transcription	Brain Germinal Matrix	brain
19	chr11:84894000-84895000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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