Variant report

Variant	rs72946026
Chromosome Location	chr2:96049354-96049355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1862898	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58338958	0.91[AFR][1000 genomes]
rs61108509	0.91[AFR][1000 genomes]
rs6730587	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72946017	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72946023	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1008945	chr2:95745367-96062107	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv817299	chr2:95799814-96159275	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv998370	chr2:95897299-96074071	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv535823	chr2:95897299-96074071	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv998014	chr2:95913278-96296630	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv528011	chr2:95931218-96057011	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1010831	chr2:95935648-96074213	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv535824	chr2:95935648-96074213	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv2757818	chr2:95970138-96152559	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv2759076	chr2:95970138-96152559	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv998543	chr2:95979772-96074212	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv535825	chr2:95979772-96074212	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv961829	chr2:96043414-96069177	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:96030400-96054600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:96036600-96054800	Weak transcription	Brain Angular Gyrus	brain
3	chr2:96040600-96050400	Weak transcription	Gastric	stomach
4	chr2:96041000-96054800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:96041400-96054600	Weak transcription	NHDF-Ad	bronchial
6	chr2:96042000-96049400	Weak transcription	Fetal Intestine Small	intestine
7	chr2:96042600-96049400	Weak transcription	Liver	Liver
8	chr2:96043200-96050000	Weak transcription	Fetal Brain Female	brain
9	chr2:96043400-96054800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:96043600-96049400	Weak transcription	Ovary	ovary
11	chr2:96043600-96050600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:96043800-96049600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:96043800-96050000	Weak transcription	Spleen	Spleen
14	chr2:96044000-96050000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:96044200-96049400	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:96045600-96049600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:96045600-96054800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:96045800-96050200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:96046600-96050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:96047200-96054600	Weak transcription	Brain Anterior Caudate	brain
21	chr2:96047400-96050200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:96048000-96049800	Strong transcription	Fetal Stomach	stomach
23	chr2:96048200-96050800	Weak transcription	Right Ventricle	heart
24	chr2:96048400-96049600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:96048600-96051000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:96048600-96054800	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:96049000-96049400	Enhancers	Duodenum Mucosa	Duodenum
28	chr2:96049000-96049400	Enhancers	Fetal Muscle Trunk	muscle
29	chr2:96049000-96049800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:96049000-96050200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:96049200-96049800	Weak transcription	HSMM	muscle

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