Variant report
| Variant | rs7294622 |
|---|---|
| Chromosome Location | chr12:62631016-62631017 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | KAP1 | chr12:62630644-62631338 | K562 | blood: | n/a | n/a |
| 2 | SETDB1 | chr12:62630909-62631191 | K562 | blood: | n/a | n/a |
| 3 | ZNF143 | chr12:62631005-62631194 | K562 | blood: | n/a | n/a |
| 4 | CBX3 | chr12:62630923-62631191 | K562 | blood: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KLF17P1 | TF binding region |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs1008721 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1269605 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7132192 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7295227 | 1.00[AMR][1000 genomes] |
| rs7299688 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74095714 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035150 | chr12:62615347-62785005 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
