Variant report

Variant	rs72947196
Chromosome Location	chr6:73787960-73787961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72941587	1.00[AFR][1000 genomes]
rs72941595	1.00[AFR][1000 genomes]
rs72943363	1.00[AFR][1000 genomes]
rs72947202	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:73783200-73788800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73783200-73789200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:73783800-73789000	Weak transcription	NH-A	brain
9	chr6:73784400-73788400	Weak transcription	HSMM	muscle
10	chr6:73784600-73788200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:73784800-73788800	Weak transcription	NHLF	lung
12	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:73785800-73789800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:73786000-73788800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:73786200-73788600	Weak transcription	Osteobl	bone
17	chr6:73786200-73790000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:73786600-73788600	Weak transcription	A549	lung
19	chr6:73786600-73789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:73786600-73789400	Weak transcription	GM12878-XiMat	blood
21	chr6:73786800-73788800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:73786800-73795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:73787000-73796000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:73787200-73789400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:73787200-73789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:73787200-73791600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:73787200-73795000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
29	chr6:73787400-73791800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:73787600-73788000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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