The 2.0 version of rSNPBase

Variant report

Variant rs72947594
Chromosome Location chr3:52620714-52620715
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52572400-52633000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:52574400-52623800 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr3:52576800-52625600 Strong transcription Fetal Thymus thymus
4 chr3:52578200-52625600 Strong transcription Primary monocytes fromperipheralblood blood
5 chr3:52585800-52627400 Weak transcription Fetal Heart heart
6 chr3:52587200-52719200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr3:52591000-52688000 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr3:52592200-52719200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr3:52595200-52631000 Weak transcription Stomach Mucosa stomach
10 chr3:52596000-52622800 Weak transcription K562 blood
11 chr3:52596000-52624200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr3:52598200-52625200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr3:52602200-52623400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr3:52602600-52624400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
15 chr3:52603400-52625400 Strong transcription Fetal Muscle Leg muscle
16 chr3:52603600-52623800 Strong transcription Liver Liver
17 chr3:52603800-52625400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr3:52604000-52623400 Strong transcription Fetal Intestine Large intestine
19 chr3:52606000-52623400 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr3:52606200-52625400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr3:52606400-52623600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr3:52606600-52623800 Strong transcription Primary neutrophils fromperipheralblood blood
23 chr3:52606600-52625400 Strong transcription Dnd41 blood
24 chr3:52606800-52623600 Strong transcription Primary T regulatory cells fromperipheralblood blood
25 chr3:52607200-52623600 Strong transcription Primary T cells from cord blood blood
26 chr3:52607400-52623200 Strong transcription Left Ventricle heart
27 chr3:52607600-52623400 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr3:52607600-52623800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr3:52607600-52623800 Strong transcription Brain Germinal Matrix brain
30 chr3:52607800-52623600 Strong transcription Adipose Nuclei Adipose
31 chr3:52607800-52623800 Strong transcription Placenta Placenta
32 chr3:52607800-52626600 Strong transcription Fetal Stomach stomach
33 chr3:52608000-52621000 Strong transcription Duodenum Smooth Muscle Duodenum
34 chr3:52608200-52621200 Strong transcription Ovary ovary
35 chr3:52608400-52623400 Strong transcription Fetal Lung lung
36 chr3:52608800-52623800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr3:52609000-52623400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr3:52610200-52621000 Weak transcription Hela-S3 cervix
39 chr3:52611800-52621000 Strong transcription Fetal Brain Female brain
40 chr3:52612000-52634800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr3:52612200-52623600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr3:52612800-52634800 Weak transcription A549 lung
43 chr3:52613200-52630600 Weak transcription Colonic Mucosa Colon
44 chr3:52613200-52634000 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr3:52613400-52621400 Weak transcription Primary B cells from cord blood blood
46 chr3:52613400-52622600 Weak transcription Primary T helper naive cells fromperipheralblood blood
47 chr3:52613400-52626800 Weak transcription Brain Cingulate Gyrus brain
48 chr3:52613400-52630600 Weak transcription Spleen Spleen
49 chr3:52613400-52635000 Weak transcription Primary T killer memory cells from peripheral blood blood
50 chr3:52613400-52635000 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015