Variant report
| Variant | rs72948526 |
|---|---|
| Chromosome Location | chr2:212641056-212641057 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| MTND2P23 | TF binding region |
| ENSG00000236007 | TF binding region |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs72931603 | 1.00[AMR][1000 genomes] |
| rs72946600 | 1.00[AMR][1000 genomes] |
| rs72948516 | 1.00[AMR][1000 genomes] |
| rs72948535 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv963773 | chr2:212638550-212645592 | Enhancers Weak transcription | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875784 | chr2:212639948-212761152 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
