Variant report

Variant	rs72949141
Chromosome Location	chr2:58254758-58254759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17049352	0.86[AFR][1000 genomes]
rs58150137	0.93[AFR][1000 genomes]
rs59350619	0.93[AFR][1000 genomes]
rs6744187	0.93[AFR][1000 genomes]
rs72949138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72949150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72949151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72949154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72949159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951080	0.86[AFR][1000 genomes]
rs72951097	0.86[AFR][1000 genomes]
rs7579768	0.93[AFR][1000 genomes]
rs7601969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874200	chr2:58163178-58262016	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv999591	chr2:58214871-58316147	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58249600-58259800	Weak transcription	Ovary	ovary
2	chr2:58251400-58272000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:58251600-58258800	Weak transcription	Primary B cells from cord blood	blood
4	chr2:58251800-58258400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:58254200-58257800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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