Variant report

Variant	rs72949429
Chromosome Location	chr11:85650630-85650631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10501603	0.85[AMR][1000 genomes]
rs10501605	0.81[AMR][1000 genomes]
rs10501607	0.81[AMR][1000 genomes]
rs12278260	0.80[AMR][1000 genomes]
rs1596739	0.87[AMR][1000 genomes]
rs17744938	0.85[AMR][1000 genomes]
rs17745105	0.83[AMR][1000 genomes]
rs17745153	0.81[AMR][1000 genomes]
rs17745236	0.81[AMR][1000 genomes]
rs17745248	0.81[AMR][1000 genomes]
rs17745273	0.81[AMR][1000 genomes]
rs17817582	0.85[AMR][1000 genomes]
rs17817588	0.85[AMR][1000 genomes]
rs17817690	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17817859	0.81[AMR][1000 genomes]
rs17817883	0.81[AMR][1000 genomes]
rs17817919	0.81[AMR][1000 genomes]
rs17817956	0.81[AMR][1000 genomes]
rs2084077	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs41381550	0.89[AMR][1000 genomes]
rs4943934	0.81[AMR][1000 genomes]
rs4943936	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4944550	0.85[AMR][1000 genomes]
rs4944553	0.81[AMR][1000 genomes]
rs4944555	0.81[AMR][1000 genomes]
rs55697624	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55791429	0.81[AMR][1000 genomes]
rs55815523	0.81[AMR][1000 genomes]
rs56187740	0.81[AMR][1000 genomes]
rs72949419	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72949443	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72951266	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72959177	0.83[AMR][1000 genomes]
rs72959197	0.83[AMR][1000 genomes]
rs72961110	0.85[AMR][1000 genomes]
rs72963077	0.81[AMR][1000 genomes]
rs72965157	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85646000-85656600	Weak transcription	Right Atrium	heart
2	chr11:85646200-85652200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:85646600-85660000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85646600-85667400	Weak transcription	Gastric	stomach
5	chr11:85649400-85651000	Enhancers	HepG2	liver
6	chr11:85650000-85651200	Enhancers	Liver	Liver
7	chr11:85650200-85651000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:85650600-85652800	Weak transcription	K562	blood

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