Variant report

Variant	rs72950111
Chromosome Location	chr3:116017246-116017247
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60772251	1.00[AFR][1000 genomes]
rs72947988	1.00[AFR][1000 genomes]
rs72948002	1.00[AFR][1000 genomes]
rs72950106	1.00[AFR][1000 genomes]
rs72950119	1.00[AFR][1000 genomes]
rs72950123	1.00[AFR][1000 genomes]
rs72950125	1.00[AFR][1000 genomes]
rs72950127	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116009000-116018600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:116009200-116018200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:116014800-116018000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:116014800-116018000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:116015000-116017800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:116015000-116018000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:116015200-116017400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:116015200-116017800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:116015400-116020800	Weak transcription	Fetal Lung	lung
10	chr3:116016800-116017400	Enhancers	Brain Anterior Caudate	brain
11	chr3:116016800-116017400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:116016800-116017400	Enhancers	Brain Substantia Nigra	brain
13	chr3:116016800-116017800	Enhancers	Brain Hippocampus Middle	brain
14	chr3:116016800-116018400	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:116016800-116018600	Enhancers	Brain Angular Gyrus	brain
16	chr3:116016800-116019600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr3:116017000-116029600	Enhancers	Colon Smooth Muscle	Colon
18	chr3:116017200-116017600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:116017200-116018200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr3:116017200-116020800	Weak transcription	Stomach Smooth Muscle	stomach

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