Variant report

Variant	rs72950449
Chromosome Location	chr4:149803382-149803383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56973742	1.00[AFR][1000 genomes]
rs59647681	1.00[AFR][1000 genomes]
rs60112920	1.00[AFR][1000 genomes]
rs72950440	1.00[AFR][1000 genomes]
rs72950468	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149801200-149804200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:149801400-149804000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:149801400-149804200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:149801800-149803600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:149802600-149804000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:149802800-149804200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:149802800-149804400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:149802800-149804800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:149803000-149804000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:149803000-149804000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr4:149803000-149804200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:149803200-149803400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr4:149803200-149803400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr4:149803200-149803600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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