Variant report

Variant	rs72950804
Chromosome Location	chr2:58474172-58474173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:58466846..58469394-chr2:58473611..58475427,3	MCF-7	breast:
2	chr2:58472143..58474612-chr2:58480304..58482330,2	K562	blood:
3	chr2:58467038..58468702-chr2:58472950..58475674,2	K562	blood:

Variant related genes	Relation type
ENSG00000115392	Chromatin interaction
ENSG00000273063	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17049332	1.00[AMR][1000 genomes]
rs17049336	1.00[AMR][1000 genomes]
rs17049352	1.00[AMR][1000 genomes]
rs57334221	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58276647	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58321248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58440082	1.00[AMR][1000 genomes]
rs58950743	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59323329	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59350619	1.00[AMR][1000 genomes]
rs60949622	1.00[AMR][1000 genomes]
rs60987670	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6709203	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6732503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6733307	1.00[AMR][1000 genomes]
rs72948807	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948815	1.00[AMR][1000 genomes]
rs72948818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948825	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948853	1.00[AMR][1000 genomes]
rs72948859	1.00[AMR][1000 genomes]
rs72948861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948884	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948885	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948886	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948887	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948898	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948900	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951053	1.00[AMR][1000 genomes]
rs72951061	1.00[AMR][1000 genomes]
rs72951063	1.00[AMR][1000 genomes]
rs72951079	1.00[AMR][1000 genomes]
rs72951080	1.00[AMR][1000 genomes]
rs72951097	1.00[AMR][1000 genomes]
rs72953110	1.00[AMR][1000 genomes]
rs72953112	1.00[AMR][1000 genomes]
rs72953119	1.00[AMR][1000 genomes]
rs72953122	1.00[AMR][1000 genomes]
rs72953124	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953130	1.00[AMR][1000 genomes]
rs7579768	1.00[AMR][1000 genomes]
rs7580070	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007527	chr2:58386271-58477536	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv535735	chr2:58386271-58477536	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv979333	chr2:58472786-58476569	Inactive region	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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