Variant report

Variant	rs72950883
Chromosome Location	chr2:113867923-113867924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113863303..113865614-chr2:113866020..113867992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136689	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10185781	0.91[ASN][1000 genomes]
rs11123159	0.86[ASN][1000 genomes]
rs11677407	0.91[ASN][1000 genomes]
rs11681884	0.91[ASN][1000 genomes]
rs11683132	0.91[ASN][1000 genomes]
rs11684277	0.91[ASN][1000 genomes]
rs11684289	0.91[ASN][1000 genomes]
rs11684371	0.91[ASN][1000 genomes]
rs11686467	0.91[ASN][1000 genomes]
rs11686511	0.91[ASN][1000 genomes]
rs11688270	0.93[ASN][1000 genomes]
rs11690459	0.86[ASN][1000 genomes]
rs11886743	0.90[ASN][1000 genomes]
rs11886754	0.90[ASN][1000 genomes]
rs11891198	0.89[ASN][1000 genomes]
rs11893386	0.90[ASN][1000 genomes]
rs11897481	0.91[ASN][1000 genomes]
rs11899198	0.87[ASN][1000 genomes]
rs13390577	0.95[ASN][1000 genomes]
rs13406085	0.95[ASN][1000 genomes]
rs13410552	0.92[ASN][1000 genomes]
rs13432148	0.92[ASN][1000 genomes]
rs1623119	0.95[ASN][1000 genomes]
rs17042810	0.87[ASN][1000 genomes]
rs17042853	0.91[ASN][1000 genomes]
rs17042888	0.95[ASN][1000 genomes]
rs17042905	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042917	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121327	0.91[ASN][1000 genomes]
rs2121329	0.92[ASN][1000 genomes]
rs55888413	0.90[ASN][1000 genomes]
rs56060225	0.85[ASN][1000 genomes]
rs56948778	0.92[ASN][1000 genomes]
rs58036696	0.95[ASN][1000 genomes]
rs58153729	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58187820	0.95[ASN][1000 genomes]
rs58922543	0.95[ASN][1000 genomes]
rs59032902	0.87[ASN][1000 genomes]
rs60341065	0.95[ASN][1000 genomes]
rs60562399	0.87[ASN][1000 genomes]
rs60924024	0.91[ASN][1000 genomes]
rs60981695	0.92[ASN][1000 genomes]
rs61366770	1.00[ASN][1000 genomes]
rs61546073	0.91[ASN][1000 genomes]
rs72946783	0.87[ASN][1000 genomes]
rs72946788	0.87[ASN][1000 genomes]
rs72950839	0.91[ASN][1000 genomes]
rs72950861	0.92[ASN][1000 genomes]
rs72950867	0.95[ASN][1000 genomes]
rs73955148	0.95[ASN][1000 genomes]
rs73955151	0.95[ASN][1000 genomes]
rs7561080	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1003928	chr2:113846503-113887782	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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