Variant report

Variant	rs72951060
Chromosome Location	chr3:70526700-70526701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72948808	1.00[AMR][1000 genomes]
rs72948811	1.00[AMR][1000 genomes]
rs72948812	1.00[AMR][1000 genomes]
rs72951046	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2762336	chr3:70516421-70527712	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70526600-70527000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:70526600-70527600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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