Variant report

Variant	rs72951145
Chromosome Location	chr3:102022126-102022127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59594928	1.00[AMR][1000 genomes]
rs72942825	1.00[AMR][1000 genomes]
rs72942833	1.00[AMR][1000 genomes]
rs72942835	1.00[AMR][1000 genomes]
rs72942849	1.00[AMR][1000 genomes]
rs72942854	1.00[AMR][1000 genomes]
rs72947087	1.00[AMR][1000 genomes]
rs72951133	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951173	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102020400-102023400	Weak transcription	HMEC	breast
2	chr3:102021200-102026000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:102021600-102022600	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links