Variant report

Variant	rs72951647
Chromosome Location	chr4:150884144-150884145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4464548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4482743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4493520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59305347	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951625	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951635	0.96[AFR][1000 genomes]
rs72951643	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955783	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72955787	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957527	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969462	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969465	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969468	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150877600-150885400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:150883400-150885200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr4:150883600-150885800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:150883800-150886400	Active TSS	Rectal Mucosa Donor 31	rectum

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