Variant report
| Variant | rs72952048 |
|---|---|
| Chromosome Location | chr4:144041217-144041218 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:144040234..144042737-chr4:144104934..144107567,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250326 | Chromatin interaction |
| ENSG00000170185 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10155329 | 0.80[AFR][1000 genomes] |
| rs10213146 | 1.00[AMR][1000 genomes] |
| rs28733456 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58440806 | 1.00[AMR][1000 genomes] |
| rs72944026 | 1.00[AMR][1000 genomes] |
| rs72944063 | 1.00[AMR][1000 genomes] |
| rs72944065 | 1.00[AMR][1000 genomes] |
| rs7662099 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034895 | chr4:143945139-144079655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
