Variant report

Variant	rs72952636
Chromosome Location	chr2:113904470-113904471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10166547	1.00[AMR][1000 genomes]
rs10184277	1.00[AMR][1000 genomes]
rs10496448	1.00[AMR][1000 genomes]
rs1446519	1.00[AMR][1000 genomes]
rs17043031	1.00[AMR][1000 genomes]
rs28928271	1.00[AMR][1000 genomes]
rs28929173	1.00[AMR][1000 genomes]
rs28938772	1.00[AMR][1000 genomes]
rs34433610	1.00[AMR][1000 genomes]
rs34510646	1.00[AMR][1000 genomes]
rs35354222	1.00[AMR][1000 genomes]
rs35528124	1.00[AMR][1000 genomes]
rs35626718	1.00[AMR][1000 genomes]
rs35724334	1.00[AMR][1000 genomes]
rs35797500	1.00[AMR][1000 genomes]
rs35835383	1.00[AMR][1000 genomes]
rs35985961	1.00[AMR][1000 genomes]
rs36026956	1.00[AMR][1000 genomes]
rs36100241	1.00[AMR][1000 genomes]
rs45527538	1.00[AMR][1000 genomes]
rs45549331	1.00[AMR][1000 genomes]
rs72944561	1.00[AMR][1000 genomes]
rs72944568	1.00[AMR][1000 genomes]
rs72944570	1.00[AMR][1000 genomes]
rs72944577	1.00[AMR][1000 genomes]
rs72944582	1.00[AMR][1000 genomes]
rs72952607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7558672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv582711	chr2:113895516-113984503	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113897000-113906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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