Variant report

Variant	rs72952968
Chromosome Location	chr6:119763622-119763623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119670384..119671915-chr6:119762116..119763764,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72952964	0.83[AMR][1000 genomes]
rs72952992	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119748200-119767000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:119758000-119765200	Weak transcription	Spleen	Spleen
3	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:119761600-119763800	Weak transcription	HSMMtube	muscle
5	chr6:119762600-119764000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:119763200-119766000	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:119763400-119763800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:119763400-119768200	Enhancers	Dnd41	blood
9	chr6:119763400-119768400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:119763400-119772200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:119763600-119763800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr6:119763600-119763800	Enhancers	GM12878-XiMat	blood
13	chr6:119763600-119764000	Enhancers	Primary B cells from cord blood	blood
14	chr6:119763600-119764000	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:119763600-119764200	Enhancers	HSMM	muscle
16	chr6:119763600-119764600	Enhancers	Thymus	Thymus
17	chr6:119763600-119765200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:119763600-119765800	Enhancers	Fetal Thymus	thymus
19	chr6:119763600-119766000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:119763600-119767600	Enhancers	Adipose Nuclei	Adipose
21	chr6:119763600-119768400	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:119763600-119772200	Enhancers	Primary neutrophils fromperipheralblood	blood

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