Variant report

Variant	rs7295349
Chromosome Location	chr12:73696191-73696192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10735973	0.80[EUR][1000 genomes]
rs1356201	0.80[EUR][1000 genomes]
rs1400060	0.80[EUR][1000 genomes]
rs1400061	0.80[EUR][1000 genomes]
rs1402194	0.80[EUR][1000 genomes]
rs1520548	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1520563	0.80[EUR][1000 genomes]
rs1818586	0.80[EUR][1000 genomes]
rs1915280	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2363060	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4760875	0.80[EUR][1000 genomes]
rs7139006	0.80[EUR][1000 genomes]
rs7295130	0.80[EUR][1000 genomes]
rs7308913	0.80[EUR][1000 genomes]
rs7311500	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756127	chr12:73278611-73765553	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2752680	chr12:73278611-73778216	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2752855	chr12:73376845-73745938	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv899274	chr12:73510254-73875790	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv2754130	chr12:73573245-73778216	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2754146	chr12:73601464-73765553	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2752618	chr12:73603758-73765553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832456	chr12:73620419-73775946	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv899276	chr12:73631083-73702955	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3346411	chr12:73664324-73719173	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1036829	chr12:73676817-73737815	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv469467	chr12:73685326-73737815	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv559373	chr12:73685326-73737815	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73696000-73696800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links