Variant report

Variant	rs72954025
Chromosome Location	chr3:112788940-112788941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58154537	1.00[AFR][1000 genomes]
rs62265101	1.00[AMR][1000 genomes]
rs72954012	1.00[AFR][1000 genomes]
rs72954018	1.00[AFR][1000 genomes]
rs72954020	1.00[AFR][1000 genomes]
rs72954021	1.00[AFR][1000 genomes]
rs72954051	1.00[AFR][1000 genomes]
rs72954059	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
3	chr3:112776600-112789000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:112784600-112789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:112784600-112792600	Weak transcription	Left Ventricle	heart
6	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
7	chr3:112787000-112791400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:112788200-112789400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:112788400-112789400	Enhancers	NHDF-Ad	bronchial
10	chr3:112788400-112790200	Enhancers	Fetal Muscle Leg	muscle
11	chr3:112788400-112790200	Enhancers	Fetal Stomach	stomach
12	chr3:112788400-112790600	Enhancers	Fetal Lung	lung
13	chr3:112788600-112789200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:112788600-112789400	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:112788800-112789800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:112788800-112790000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:112788800-112790200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:112788800-112790200	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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