Variant report

Variant	rs72954934
Chromosome Location	chr1:91942555-91942556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57316302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60079744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60683044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952991	1.00[EUR][1000 genomes]
rs72952993	1.00[EUR][1000 genomes]
rs72952997	1.00[EUR][1000 genomes]
rs72954932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91939000-91942600	Weak transcription	Fetal Kidney	kidney
2	chr1:91942000-91942800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:91942000-91943400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:91942200-91942600	Enhancers	Adipose Nuclei	Adipose
5	chr1:91942200-91942600	Enhancers	Ovary	ovary
6	chr1:91942200-91943400	Enhancers	Fetal Stomach	stomach
7	chr1:91942400-91942800	Enhancers	Small Intestine	intestine
8	chr1:91942400-91943000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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