Variant report

Variant	rs72955520
Chromosome Location	chr11:84635560-84635561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12807740	0.83[AFR][1000 genomes]
rs17809374	0.80[ASN][1000 genomes]
rs35580263	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72957799	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84632600-84636000	Active TSS	Brain Angular Gyrus	brain
2	chr11:84632800-84635600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:84633200-84635800	Active TSS	Brain Anterior Caudate	brain
4	chr11:84633800-84635600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr11:84634200-84635600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:84634200-84635800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:84634200-84636000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:84634400-84635800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:84634400-84635800	Weak transcription	Aorta	Aorta
10	chr11:84634400-84636000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:84634400-84636000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:84634400-84636000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:84634400-84636000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:84634400-84636200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:84634600-84635600	Enhancers	Fetal Heart	heart
16	chr11:84634800-84635600	Enhancers	Left Ventricle	heart
17	chr11:84634800-84635600	Weak transcription	Psoas Muscle	Psoas
18	chr11:84635000-84635600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:84635000-84635800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:84635200-84635600	Active TSS	Brain Cingulate Gyrus	brain
21	chr11:84635200-84635600	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr11:84635400-84635600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr11:84635400-84635600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:84635400-84635600	Flanking Active TSS	Fetal Brain Female	brain
25	chr11:84635400-84636200	Enhancers	Fetal Brain Male	brain

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