Variant report

Variant	rs72955703
Chromosome Location	chr2:100605897-100605898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17023356	1.00[AFR][1000 genomes]
rs6758669	0.92[AFR][1000 genomes]
rs72953781	0.88[AFR][1000 genomes]
rs72953789	1.00[AFR][1000 genomes]
rs72953793	0.92[AFR][1000 genomes]
rs72953796	1.00[AFR][1000 genomes]
rs72955705	1.00[AFR][1000 genomes]
rs72955708	1.00[AFR][1000 genomes]
rs72955712	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100550800-100618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:100564800-100617000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:100577400-100618200	Weak transcription	Aorta	Aorta
5	chr2:100577800-100607400	Weak transcription	Thymus	Thymus
6	chr2:100577800-100623000	Weak transcription	Adipose Nuclei	Adipose
7	chr2:100577800-100623000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:100578000-100616200	Weak transcription	Fetal Thymus	thymus
9	chr2:100582400-100608000	Weak transcription	Fetal Stomach	stomach
10	chr2:100583200-100608000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr2:100587400-100623000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr2:100587400-100623000	Weak transcription	Spleen	Spleen
13	chr2:100590400-100618000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:100591000-100607200	Weak transcription	Brain Germinal Matrix	brain
15	chr2:100592600-100626400	Weak transcription	NH-A	brain
16	chr2:100594600-100623000	Weak transcription	Gastric	stomach
17	chr2:100598600-100623000	Weak transcription	Lung	lung
18	chr2:100599000-100614000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:100599800-100606600	Weak transcription	Dnd41	blood
20	chr2:100600200-100607600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:100600400-100616800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:100601600-100607200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:100603400-100611600	Strong transcription	Primary B cells from cord blood	blood
24	chr2:100604200-100606800	Enhancers	Fetal Heart	heart
25	chr2:100605000-100614200	Weak transcription	Fetal Brain Female	brain
26	chr2:100605200-100615200	Weak transcription	Fetal Muscle Leg	muscle
27	chr2:100605200-100627200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:100605400-100615600	Weak transcription	Primary T cells from cord blood	blood
29	chr2:100605400-100623000	Weak transcription	Ovary	ovary
30	chr2:100605400-100627800	Weak transcription	Right Ventricle	heart
31	chr2:100605600-100614600	Weak transcription	Fetal Brain Male	brain
32	chr2:100605800-100607400	Weak transcription	Fetal Lung	lung
33	chr2:100605800-100615000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links