Variant report

Variant	rs72957144
Chromosome Location	chr3:102773790-102773791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11919233	1.00[AFR][1000 genomes]
rs11927036	1.00[AFR][1000 genomes]
rs11927140	1.00[AFR][1000 genomes]
rs13322366	1.00[AFR][1000 genomes]
rs1390673	1.00[AFR][1000 genomes]
rs2068780	1.00[AFR][1000 genomes]
rs4101275	0.96[AFR][1000 genomes]
rs59187331	1.00[AFR][1000 genomes]
rs61215606	0.96[AFR][1000 genomes]
rs61525922	1.00[AFR][1000 genomes]
rs72957106	1.00[AFR][1000 genomes]
rs72957147	1.00[AFR][1000 genomes]
rs9837405	1.00[AFR][1000 genomes]
rs9858986	0.96[AFR][1000 genomes]
rs9862413	1.00[AFR][1000 genomes]
rs9873922	1.00[AFR][1000 genomes]
rs9876189	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102771000-102775600	Enhancers	Fetal Intestine Small	intestine
2	chr3:102772200-102774000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:102772200-102774200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:102772200-102775200	Weak transcription	Adipose Nuclei	Adipose
5	chr3:102772200-102775600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:102772200-102775600	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:102772200-102775800	Weak transcription	Small Intestine	intestine
8	chr3:102773200-102777200	Enhancers	Fetal Intestine Large	intestine
9	chr3:102773600-102774800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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