Variant report

Variant	rs72957893
Chromosome Location	chr4:151478529-151478530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72959811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959814	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151470400-151503600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:151472000-151483000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:151472000-151490000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:151472000-151501400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:151472600-151500200	Weak transcription	Aorta	Aorta
6	chr4:151473200-151484000	Weak transcription	Fetal Kidney	kidney
7	chr4:151473400-151486000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:151473400-151491200	Weak transcription	Ovary	ovary
9	chr4:151474200-151489600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:151474800-151486400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:151475200-151486200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:151475400-151478800	Weak transcription	K562	blood
13	chr4:151475400-151486000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:151475400-151486200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:151475400-151486200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr4:151475400-151486400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:151475600-151486000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:151475600-151486000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:151475600-151486000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:151477200-151478800	Weak transcription	Primary T cells from cord blood	blood
21	chr4:151477200-151486000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:151477200-151486400	Weak transcription	Fetal Intestine Small	intestine
23	chr4:151477200-151502400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:151478400-151486200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links