Variant report

Variant	rs72959802
Chromosome Location	chr3:115870036-115870037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1920369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2141625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56964012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57214128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61244371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72959799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961512	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961514	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961517	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9681792	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2751976	chr3:115867310-115903310	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115866800-115871600	Enhancers	Brain Germinal Matrix	brain
2	chr3:115867200-115870200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:115867200-115870200	Enhancers	Brain Angular Gyrus	brain
4	chr3:115867600-115870200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:115867800-115870400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:115868400-115872000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:115868600-115879600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:115868800-115872000	Weak transcription	Fetal Lung	lung
9	chr3:115869000-115880000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:115869200-115871200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:115869200-115871600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:115869400-115874800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:115869600-115872000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:115869800-115870400	Enhancers	Brain Hippocampus Middle	brain
15	chr3:115869800-115874600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:115870000-115870400	Enhancers	Colon Smooth Muscle	Colon
17	chr3:115870000-115871200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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