Variant report

Variant	rs72961376
Chromosome Location	chr1:93947011-93947012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1426316	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674222	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961391	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963303	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:93941200-93947400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
4	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:93944200-93947400	Weak transcription	Gastric	stomach
6	chr1:93944200-93952200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:93944200-93954800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:93945000-93950200	Weak transcription	HepG2	liver
11	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:93945400-93949800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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