Variant report

Variant	rs72961654
Chromosome Location	chr2:115614619-115614620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11883994	1.00[AMR][1000 genomes]
rs17043810	1.00[AMR][1000 genomes]
rs41507450	1.00[AMR][1000 genomes]
rs56679181	1.00[AMR][1000 genomes]
rs72943759	1.00[AMR][1000 genomes]
rs72945854	1.00[AMR][1000 genomes]
rs73949011	1.00[AMR][1000 genomes]
rs73949020	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv874916	chr2:115589606-115647583	Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115612200-115617200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:115612600-115617200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:115612600-115617200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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