Variant report

Variant	rs72964659
Chromosome Location	chr11:93719895-93719896
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93718251..93719933-chr11:93722882..93724386,2	K562	blood:
2	chr11:93718654..93721406-chr11:93860779..93862683,2	MCF-7	breast:
3	chr11:93718444..93721972-chr11:93724685..93727460,3	K562	blood:

Variant related genes	Relation type
ENSG00000110218	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72964638	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72964649	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72964662	1.00[EUR][1000 genomes]
rs72978464	1.00[AFR][1000 genomes]
rs72978488	1.00[AFR][1000 genomes]
rs72980506	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv555965	chr11:93713911-93747735	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93716800-93721000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:93718400-93721000	Enhancers	HMEC	breast
3	chr11:93718600-93721000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:93718800-93720200	Weak transcription	K562	blood
5	chr11:93718800-93720800	Enhancers	NHEK	skin
6	chr11:93719200-93720800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:93719400-93720400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:93719400-93720800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:93719400-93720800	Enhancers	Fetal Lung	lung
10	chr11:93719400-93720800	Enhancers	Stomach Mucosa	stomach
11	chr11:93719600-93720200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:93719600-93720400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:93719600-93720600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:93719600-93720600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:93719600-93720600	Bivalent Enhancer	A549	lung
16	chr11:93719600-93720800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:93719600-93720800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:93719600-93720800	Enhancers	Pancreas	Pancrea
19	chr11:93719600-93721000	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr11:93719800-93720200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:93719800-93720200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr11:93719800-93720600	Enhancers	HUES6 Cell Line	embryonic stem cell

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