Variant report
| Variant | rs7296550 |
|---|---|
| Chromosome Location | chr12:48313181-48313182 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111424 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10875696 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11168297 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11614332 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4516035 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4760671 | 0.83[EUR][1000 genomes] |
| rs7139166 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7310552 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7311856 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428589 | chr12:48282920-48341192 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
