Variant report

Variant	rs72965515
Chromosome Location	chr6:117858223-117858224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:117857957-117858337	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117857865..117860063-chr6:117863787..117868027,4	K562	blood:
2	chr6:117803821..117805534-chr6:117857279..117859529,2	K562	blood:

Variant related genes	Relation type
DCBLD1	TF binding region
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10484301	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751773	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205852	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17637404	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963484	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72963492	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688605	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
2	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
5	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
7	chr6:117834400-117861800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:117834400-117863600	Weak transcription	Gastric	stomach
9	chr6:117834800-117860600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:117835200-117868800	Weak transcription	Colonic Mucosa	Colon
11	chr6:117835400-117868800	Weak transcription	Psoas Muscle	Psoas
12	chr6:117836600-117861800	Weak transcription	Pancreas	Pancrea
13	chr6:117836600-117869600	Weak transcription	Stomach Mucosa	stomach
14	chr6:117837200-117860600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:117838600-117869000	Weak transcription	Ovary	ovary
16	chr6:117842000-117860600	Weak transcription	Fetal Stomach	stomach
17	chr6:117842800-117866200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:117845200-117866200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:117845800-117868800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:117846800-117869600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:117847600-117861800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:117851800-117859800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:117851800-117860600	Weak transcription	Fetal Intestine Small	intestine
24	chr6:117851800-117868800	Weak transcription	Right Ventricle	heart
25	chr6:117852400-117858600	Strong transcription	HepG2	liver
26	chr6:117852600-117861400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:117852800-117859400	Weak transcription	Adipose Nuclei	Adipose
28	chr6:117852800-117859800	Weak transcription	GM12878-XiMat	blood
29	chr6:117852800-117863600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:117852800-117867800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:117853000-117861400	Weak transcription	Fetal Lung	lung
32	chr6:117853200-117861800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:117853200-117862600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:117853200-117868600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr6:117853200-117868600	Strong transcription	HSMM	muscle
36	chr6:117853400-117860400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:117853400-117868800	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:117853400-117868800	Weak transcription	NHDF-Ad	bronchial
39	chr6:117853600-117859600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:117853600-117868600	Strong transcription	Osteobl	bone
41	chr6:117853600-117868800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:117854000-117860200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:117854200-117868800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:117854400-117868800	Weak transcription	Brain Angular Gyrus	brain
45	chr6:117854800-117858400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:117855000-117868200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr6:117855200-117860600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:117855200-117861000	Weak transcription	Left Ventricle	heart
49	chr6:117855400-117859000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:117856600-117859200	Weak transcription	A549	lung

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