Variant report

Variant	rs72965585
Chromosome Location	chr4:151061301-151061302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4632637	1.00[AMR][1000 genomes]
rs57633531	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58498378	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61172197	1.00[AMR][1000 genomes]
rs72963424	0.88[AFR][1000 genomes]
rs72963434	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963452	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963483	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965535	1.00[AMR][1000 genomes]
rs72965567	1.00[AMR][1000 genomes]
rs72965579	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151038800-151070000	Weak transcription	Ovary	ovary
2	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:151049200-151074000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:151051800-151062600	Weak transcription	Fetal Heart	heart
5	chr4:151053200-151062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:151056800-151061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:151057800-151061400	Weak transcription	NHLF	lung
8	chr4:151057800-151070600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:151058000-151061400	Weak transcription	HUVEC	blood vessel
10	chr4:151058400-151062400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:151058600-151061400	Weak transcription	Left Ventricle	heart
12	chr4:151058600-151061600	Weak transcription	NH-A	brain
13	chr4:151058600-151062600	Weak transcription	Brain Germinal Matrix	brain
14	chr4:151058800-151062200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:151059000-151062000	Enhancers	A549	lung
16	chr4:151060400-151061800	Enhancers	Brain Anterior Caudate	brain
17	chr4:151060400-151062000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:151060400-151062200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:151060400-151062200	Enhancers	Hela-S3	cervix
20	chr4:151060400-151062200	Enhancers	Osteobl	bone
21	chr4:151060400-151062400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:151060400-151062400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:151060400-151062800	Enhancers	Colon Smooth Muscle	Colon
24	chr4:151060400-151063400	Enhancers	HSMM	muscle
25	chr4:151060600-151062000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:151060600-151062400	Enhancers	NHDF-Ad	bronchial
27	chr4:151060800-151061600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:151060800-151062200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:151060800-151062200	Enhancers	NHEK	skin
30	chr4:151060800-151062400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:151060800-151062600	Enhancers	Rectal Smooth Muscle	rectum
32	chr4:151061000-151061400	Weak transcription	HMEC	breast
33	chr4:151061000-151061600	Weak transcription	Brain Substantia Nigra	brain
34	chr4:151061000-151062400	Weak transcription	HSMMtube	muscle
35	chr4:151061000-151063800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:151061200-151061800	Enhancers	Aorta	Aorta

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