Variant report

Variant	rs7296561
Chromosome Location	chr12:104091539-104091540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11111716	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs696214	0.82[AMR][1000 genomes]
rs697204	0.82[AMR][1000 genomes]
rs697205	0.82[AMR][1000 genomes]
rs697206	0.82[AMR][1000 genomes]
rs697207	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7136870	0.82[EUR][1000 genomes]
rs7296691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312283	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104089800-104093800	Strong transcription	Spleen	Spleen
2	chr12:104090200-104097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:104091200-104092000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:104091400-104093600	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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