Variant report

Variant	rs7296634
Chromosome Location	chr12:41671473-41671474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41670983..41671656-chr12:42057034..42057781,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10879971	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1431121	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1880890	0.81[ASN][1000 genomes]
rs2405906	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2405908	0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4567533	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7135134	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304429	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs735211	0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs764095	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7953382	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv469364	chr12:41631105-41710912	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv558699	chr12:41631105-41710912	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv558700	chr12:41665279-41710912	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41670600-41672200	Enhancers	Brain Germinal Matrix	brain
2	chr12:41671000-41671600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:41671000-41671600	Flanking Active TSS	Brain Substantia Nigra	brain
4	chr12:41671000-41671600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr12:41671200-41671600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:41671200-41671600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:41671200-41671600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:41671200-41671600	Flanking Active TSS	Brain Angular Gyrus	brain
9	chr12:41671200-41671600	Flanking Active TSS	Brain Anterior Caudate	brain
10	chr12:41671200-41671600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr12:41671200-41671600	Enhancers	Fetal Intestine Small	intestine
12	chr12:41671200-41671600	Enhancers	Gastric	stomach
13	chr12:41671200-41671800	Enhancers	Colon Smooth Muscle	Colon
14	chr12:41671200-41672000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:41671200-41684600	Weak transcription	Ovary	ovary
16	chr12:41671400-41671600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:41671400-41671600	Enhancers	Brain Cingulate Gyrus	brain
18	chr12:41671400-41671600	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr12:41671400-41671600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr12:41671400-41671600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:41671400-41671600	Enhancers	Fetal Intestine Large	intestine
22	chr12:41671400-41674200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links