Variant report

Variant	rs72968012
Chromosome Location	chr3:120934893-120934894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57947078	1.00[AFR][1000 genomes]
rs59391975	1.00[AFR][1000 genomes]
rs59996928	1.00[AFR][1000 genomes]
rs60606624	1.00[AFR][1000 genomes]
rs61355261	1.00[AFR][1000 genomes]
rs72966188	1.00[AFR][1000 genomes]
rs72966200	1.00[AFR][1000 genomes]
rs72968006	1.00[AFR][1000 genomes]
rs72968007	1.00[AFR][1000 genomes]
rs72968014	1.00[AFR][1000 genomes]
rs72968017	1.00[AFR][1000 genomes]
rs72968024	1.00[AFR][1000 genomes]
rs72968026	1.00[AFR][1000 genomes]
rs72968029	1.00[AFR][1000 genomes]
rs72968031	1.00[AFR][1000 genomes]
rs72968036	1.00[AFR][1000 genomes]
rs72968038	1.00[AFR][1000 genomes]
rs72968042	1.00[AFR][1000 genomes]
rs72968058	1.00[AFR][1000 genomes]
rs72968060	1.00[AFR][1000 genomes]
rs72968075	1.00[AFR][1000 genomes]
rs72968079	1.00[AFR][1000 genomes]
rs72969904	1.00[AFR][1000 genomes]
rs72969916	1.00[AFR][1000 genomes]
rs72969920	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1005525	chr3:120749594-121027161	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1012777	chr3:120883846-120974864	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120914800-120935400	Weak transcription	Ovary	ovary

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