Variant report

Variant	rs72968858
Chromosome Location	chr3:120783063-120783064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs56883189	1.00[AFR][1000 genomes]
rs60718086	1.00[AFR][1000 genomes]
rs61312244	1.00[AFR][1000 genomes]
rs61610238	1.00[AFR][1000 genomes]
rs72956027	1.00[AFR][1000 genomes]
rs72956063	1.00[AFR][1000 genomes]
rs72956067	1.00[AFR][1000 genomes]
rs72956071	1.00[AFR][1000 genomes]
rs72956077	1.00[AFR][1000 genomes]
rs72956079	1.00[AFR][1000 genomes]
rs72956081	1.00[AFR][1000 genomes]
rs72964775	1.00[AFR][1000 genomes]
rs72964782	1.00[AFR][1000 genomes]
rs72964798	1.00[AFR][1000 genomes]
rs72964800	1.00[AFR][1000 genomes]
rs72966144	1.00[AFR][1000 genomes]
rs72966152	1.00[AFR][1000 genomes]
rs72966155	1.00[AFR][1000 genomes]
rs72966156	1.00[AFR][1000 genomes]
rs72966158	1.00[AFR][1000 genomes]
rs72966166	1.00[AFR][1000 genomes]
rs72966171	1.00[AFR][1000 genomes]
rs72966703	1.00[AFR][1000 genomes]
rs72966708	1.00[AFR][1000 genomes]
rs72966710	1.00[AFR][1000 genomes]
rs72966714	1.00[AFR][1000 genomes]
rs72966762	1.00[AFR][1000 genomes]
rs72966772	1.00[AFR][1000 genomes]
rs72966774	1.00[AFR][1000 genomes]
rs72966775	1.00[AFR][1000 genomes]
rs72966802	1.00[AFR][1000 genomes]
rs72968808	1.00[AFR][1000 genomes]
rs72968812	1.00[AFR][1000 genomes]
rs72968818	1.00[AFR][1000 genomes]
rs72968838	1.00[AFR][1000 genomes]
rs72968840	1.00[AFR][1000 genomes]
rs72968844	1.00[AFR][1000 genomes]
rs72968852	1.00[AFR][1000 genomes]
rs72968854	1.00[AFR][1000 genomes]
rs72968862	1.00[AFR][1000 genomes]
rs72970628	1.00[AFR][1000 genomes]
rs72970639	1.00[AFR][1000 genomes]
rs72970647	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1005551	chr3:120710530-120803826	Strong transcription Enhancers ZNF genes & repeats Weak transcription	TF binding region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1008441	chr3:120730017-121102735	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv536709	chr3:120730017-121102735	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1005525	chr3:120749594-121027161	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120769000-120791200	Weak transcription	Ovary	ovary
2	chr3:120781600-120790800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:120782200-120783200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:120782200-120783200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:120782400-120783200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:120782600-120783200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:120782600-120783200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:120782800-120783200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:120783000-120783400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:120783000-120789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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