Variant report

Variant	rs72969868
Chromosome Location	chr1:74934057-74934058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FPGT-1	chr1:74933443-74934233	NONHSAT003960
2	lnc-FPGT-1	chr1:74933443-74934233	NONHSAT003961
3	lnc-FPGT-1	chr1:74933443-74934233	NONHSAT003962
4	lnc-FPGT-1	chr1:74933443-74934233	NONHSAT003963
5	lnc-FPGT-1	chr1:74933879-74934233	ENSG00000233894.1

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10493542	1.00[ASN][1000 genomes]
rs10493543	1.00[ASN][1000 genomes]
rs17095376	0.95[ASN][1000 genomes]
rs17095380	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095385	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095421	1.00[ASN][1000 genomes]
rs17095449	0.90[ASN][1000 genomes]
rs17095451	0.90[ASN][1000 genomes]
rs17095455	0.90[ASN][1000 genomes]
rs17095460	0.90[ASN][1000 genomes]
rs17095463	0.90[ASN][1000 genomes]
rs17095465	0.85[ASN][1000 genomes]
rs17095473	0.85[ASN][1000 genomes]
rs17095482	0.85[ASN][1000 genomes]
rs17095483	0.85[ASN][1000 genomes]
rs1998770	0.90[ASN][1000 genomes]
rs1998771	0.90[ASN][1000 genomes]
rs34871290	0.90[ASN][1000 genomes]
rs3737564	0.95[ASN][1000 genomes]
rs3737566	1.00[ASN][1000 genomes]
rs3819944	0.90[ASN][1000 genomes]
rs4372202	1.00[ASN][1000 genomes]
rs45519034	1.00[ASN][1000 genomes]
rs45545234	0.90[ASN][1000 genomes]
rs45587936	0.85[ASN][1000 genomes]
rs45609532	0.85[ASN][1000 genomes]
rs61140856	1.00[ASN][1000 genomes]
rs6701139	0.85[ASN][1000 genomes]
rs6704493	0.85[ASN][1000 genomes]
rs72971710	1.00[ASN][1000 genomes]
rs72977490	0.90[ASN][1000 genomes]
rs7416565	0.85[ASN][1000 genomes]
rs9326113	1.00[ASN][1000 genomes]
rs9326114	1.00[ASN][1000 genomes]
rs9727476	1.00[ASN][1000 genomes]
rs9729683	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522147	chr1:74338530-74983835	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1003171	chr1:74407468-75122270	Strong transcription Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv535000	chr1:74407468-75122270	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1007414	chr1:74726454-74976335	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv535002	chr1:74726454-74976335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1010042	chr1:74798856-75001977	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1002903	chr1:74831209-74993866	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74929200-74936400	Weak transcription	Left Ventricle	heart
2	chr1:74930400-74935400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:74930400-74936600	Weak transcription	Right Atrium	heart
4	chr1:74931400-74936400	Weak transcription	Right Ventricle	heart
5	chr1:74932400-74934800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:74932400-74936600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:74932400-74953600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:74932800-74934200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:74932800-74936000	Enhancers	Fetal Heart	heart
10	chr1:74933400-74934800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:74933600-74934400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:74933600-74934800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:74933800-74934200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:74934000-74934200	Enhancers	HUES48 Cell Line	embryonic stem cell

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