Variant report

Variant	rs72969911
Chromosome Location	chr1:93366128-93366129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58841378	0.91[AFR][1000 genomes]
rs6656130	1.00[AFR][1000 genomes]
rs72969954	0.91[AFR][1000 genomes]
rs72969971	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93350000-93366400	Weak transcription	Thymus	Thymus
2	chr1:93361800-93366800	Weak transcription	Aorta	Aorta
3	chr1:93363600-93369400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:93364000-93368800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:93364000-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:93364400-93366800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:93364400-93367000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:93364600-93366400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr1:93364600-93375200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:93365000-93373800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:93365200-93366800	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr1:93365800-93367200	Weak transcription	Primary B cells from cord blood	blood
13	chr1:93365800-93367400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:93365800-93374600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:93366000-93368800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:93366000-93369000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links