Variant report

Variant	rs72971460
Chromosome Location	chr3:136313916-136313917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136313460..136316433-chr3:136321833..136323832,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16844044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1794138	chr3:136300732-136332204	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:136212200-136323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:136213000-136326600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:136247200-136319800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:136247200-136334800	Weak transcription	Aorta	Aorta
6	chr3:136248200-136349200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:136251400-136319000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:136251600-136322400	Weak transcription	Liver	Liver
9	chr3:136252600-136320400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:136252800-136314800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:136263000-136327200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:136265400-136314800	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:136266400-136315600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:136266600-136314600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:136266600-136316200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:136266800-136314800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:136268200-136351200	Weak transcription	Esophagus	oesophagus
18	chr3:136271200-136331400	Weak transcription	NHDF-Ad	bronchial
19	chr3:136272600-136335600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:136274200-136314000	Weak transcription	GM12878-XiMat	blood
21	chr3:136277800-136315200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:136280000-136323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:136283600-136314600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:136283800-136341800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:136284400-136337800	Weak transcription	Fetal Kidney	kidney
26	chr3:136285000-136314800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:136285200-136335400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:136286600-136314600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:136286800-136322600	Weak transcription	Placenta	Placenta
30	chr3:136286800-136343600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr3:136287200-136335400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:136289600-136341800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:136290000-136351600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:136290400-136315000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:136294400-136314600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:136294800-136319600	Weak transcription	Fetal Lung	lung
37	chr3:136297200-136345400	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:136297200-136351200	Weak transcription	Pancreas	Pancrea
39	chr3:136297600-136314600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:136297800-136315600	Weak transcription	Psoas Muscle	Psoas
41	chr3:136298400-136314000	Weak transcription	HUVEC	blood vessel
42	chr3:136298600-136315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:136298600-136315000	Weak transcription	Small Intestine	intestine
44	chr3:136298600-136351600	Weak transcription	HSMM	muscle
45	chr3:136300000-136335400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:136300200-136351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:136303800-136314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:136304800-136318600	Weak transcription	Fetal Intestine Large	intestine
49	chr3:136304800-136331200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:136304800-136331400	Weak transcription	NHLF	lung

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