Variant report

Variant	rs72972045
Chromosome Location	chr4:86825400-86825401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10516765	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17011207	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17011210	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57403057	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61758879	1.00[EUR][1000 genomes]
rs6840989	1.00[EUR][1000 genomes]
rs72972047	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
4	chr4:86812200-86831200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86812400-86831000	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:86815400-86825400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:86815800-86831000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:86815800-86842800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:86818000-86831000	Weak transcription	Pancreas	Pancrea
10	chr4:86818400-86831200	Weak transcription	Right Ventricle	heart
11	chr4:86821600-86827200	Weak transcription	Fetal Kidney	kidney
12	chr4:86823200-86828600	Weak transcription	Primary B cells from cord blood	blood
13	chr4:86823600-86825800	Weak transcription	A549	lung
14	chr4:86823800-86832400	Weak transcription	NHDF-Ad	bronchial
15	chr4:86825200-86825800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:86825400-86825600	Enhancers	Left Ventricle	heart
17	chr4:86825400-86826800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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