Variant report

Variant	rs72972187
Chromosome Location	chr4:167421089-167421090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59341511	1.00[AFR][1000 genomes]
rs59724591	1.00[AFR][1000 genomes]
rs60103381	1.00[AFR][1000 genomes]
rs72970269	1.00[AFR][1000 genomes]
rs72970298	1.00[AFR][1000 genomes]
rs72972112	1.00[AFR][1000 genomes]
rs72972139	1.00[AFR][1000 genomes]
rs72988470	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034421	chr4:166961339-167893289	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv537339	chr4:166961339-167893289	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv881405	chr4:167193885-167628013	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023051	chr4:167304814-168211540	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv537340	chr4:167304814-168211540	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv881309	chr4:167377133-167500233	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv830143	chr4:167386232-167538014	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1017028	chr4:167420519-167697787	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:167420000-167421200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:167420000-167422800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:167420000-167423200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:167420000-167423200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:167420000-167423400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:167420400-167421800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:167420600-167421400	Weak transcription	Fetal Stomach	stomach
8	chr4:167420600-167422400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:167420800-167421400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:167420800-167422000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:167420800-167422000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:167421000-167421200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:167421000-167421200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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