Variant report

Variant	rs72973410
Chromosome Location	chr3:136370036-136370037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136365030..136366947-chr3:136367021..136371094,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11924476	0.89[AFR][1000 genomes]
rs16846089	0.89[AFR][1000 genomes]
rs34572383	1.00[AFR][1000 genomes]
rs41537550	1.00[AFR][1000 genomes]
rs57840312	1.00[AFR][1000 genomes]
rs72989452	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136348800-136373600	Weak transcription	Thymus	Thymus
2	chr3:136349800-136372400	Weak transcription	Dnd41	blood
3	chr3:136350600-136372200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:136351600-136376200	Weak transcription	Esophagus	oesophagus
5	chr3:136352400-136371600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:136352400-136371600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:136352400-136371800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
9	chr3:136364600-136371800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:136364800-136372200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:136364800-136377800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:136365000-136396400	Weak transcription	Gastric	stomach
13	chr3:136365200-136370600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:136365200-136381400	Weak transcription	Pancreas	Pancrea
15	chr3:136367400-136371000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:136368000-136370600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:136368200-136371400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:136368200-136385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:136369000-136371800	Weak transcription	Fetal Intestine Small	intestine
20	chr3:136369000-136386800	Weak transcription	Lung	lung
21	chr3:136369600-136370400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:136369800-136371000	Enhancers	Colon Smooth Muscle	Colon
23	chr3:136369800-136371000	Enhancers	K562	blood
24	chr3:136369800-136372400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr3:136370000-136370800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:136370000-136370800	Enhancers	Aorta	Aorta
27	chr3:136370000-136370800	Enhancers	Ovary	ovary
28	chr3:136370000-136370800	Enhancers	Psoas Muscle	Psoas

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