Variant report

Variant	rs72973908
Chromosome Location	chr11:105052463-105052464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72973970	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72990658	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72990669	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv528789	chr11:105014564-105133046	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1045900	chr11:105015999-105138877	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv556220	chr11:105042650-105112018	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2762942	chr11:105044258-105066898	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv442242	chr11:105049805-105066898	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105050200-105053000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:105050200-105055000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:105051800-105052600	Active TSS	Primary hematopoietic stem cells	blood
4	chr11:105051800-105052600	Enhancers	HUVEC	blood vessel
5	chr11:105051800-105052600	Enhancers	NH-A	brain
6	chr11:105051800-105055400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:105051800-105055400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:105052000-105052600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:105052000-105052600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:105052000-105052600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:105052000-105052800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:105052000-105052800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr11:105052000-105052800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:105052000-105052800	Enhancers	Fetal Intestine Small	intestine
15	chr11:105052000-105052800	Enhancers	Fetal Lung	lung
16	chr11:105052200-105052600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:105052200-105052600	Enhancers	NHLF	lung
18	chr11:105052200-105052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:105052200-105052800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:105052200-105052800	Active TSS	Primary B cells from cord blood	blood
21	chr11:105052400-105052600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:105052400-105052800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:105052400-105052800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:105052400-105052800	Enhancers	Brain Anterior Caudate	brain
25	chr11:105052400-105052800	Enhancers	Fetal Intestine Large	intestine
26	chr11:105052400-105052800	Enhancers	Hela-S3	cervix
27	chr11:105052400-105052800	Enhancers	NHDF-Ad	bronchial
28	chr11:105052400-105054600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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