Variant report
Variant | rs72975064 |
---|---|
Chromosome Location | chr2:141790298-141790299 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs57278894 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs58237958 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs60047991 | 0.89[EUR][1000 genomes] |
rs60260944 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs61374054 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72975021 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes] |
rs72975031 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes] |
rs72975033 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72975034 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72975035 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes] |
rs72975037 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72975041 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72975043 | 0.95[AMR][1000 genomes] |
rs72975048 | 0.92[AFR][1000 genomes] |
rs72981063 | 0.96[EUR][1000 genomes] |
rs72991755 | 0.89[EUR][1000 genomes] |
rs72991765 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs72991770 | 0.89[EUR][1000 genomes] |
rs72991775 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv875208 | chr2:141657878-141795620 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv875210 | chr2:141764693-141818657 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv875211 | chr2:141764693-141846346 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:141773600-141806800 | Weak transcription | Brain Angular Gyrus | brain |
2 | chr2:141787400-141790600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |