Variant report

Variant	rs72975756
Chromosome Location	chr1:98113980-98113981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs72975752	1.00[AFR][1000 genomes]
rs72975769	0.86[AFR][1000 genomes]
rs72975780	0.86[AFR][1000 genomes]
rs72975782	0.86[AFR][1000 genomes]
rs72975784	0.86[AFR][1000 genomes]
rs72975789	0.86[AFR][1000 genomes]
rs72975800	0.86[AFR][1000 genomes]
rs72977703	0.86[AFR][1000 genomes]
rs72977706	0.86[AFR][1000 genomes]
rs72977712	0.86[AFR][1000 genomes]
rs72977717	0.86[AFR][1000 genomes]
rs72977721	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv533039	chr1:97665736-98343102	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv530049	chr1:97883261-98384614	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv830714	chr1:98025090-98229416	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98087800-98143600	Weak transcription	Ovary	ovary
2	chr1:98097000-98115600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:98097000-98119200	Weak transcription	Left Ventricle	heart
4	chr1:98098400-98114000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:98111800-98141800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:98112200-98117000	Weak transcription	Brain Substantia Nigra	brain
7	chr1:98112600-98115600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:98112600-98119600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:98112600-98121600	Weak transcription	Primary T cells from cord blood	blood
10	chr1:98112600-98134600	Weak transcription	HSMM	muscle
11	chr1:98112600-98135800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:98112800-98125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:98112800-98135400	Weak transcription	Primary B cells from cord blood	blood
14	chr1:98112800-98135600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:98112800-98143800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:98113000-98121600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:98113000-98125000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:98113000-98141800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:98113200-98114000	Strong transcription	Dnd41	blood
20	chr1:98113400-98114000	Enhancers	Hela-S3	cervix
21	chr1:98113400-98114200	Enhancers	NHDF-Ad	bronchial
22	chr1:98113400-98114400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:98113400-98114400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:98113400-98115800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:98113600-98114000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:98113600-98114000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:98113600-98114000	Enhancers	NH-A	brain
28	chr1:98113600-98114000	Enhancers	NHLF	lung
29	chr1:98113800-98114200	Strong transcription	Liver	Liver
30	chr1:98113800-98117800	Weak transcription	Osteobl	bone
31	chr1:98113800-98119200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links