Variant report

Variant	rs72976102
Chromosome Location	chr1:112811053-112811054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17029995	1.00[AMR][1000 genomes]
rs17030000	1.00[AMR][1000 genomes]
rs72976074	1.00[AMR][1000 genomes]
rs72976095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978059	1.00[AMR][1000 genomes]
rs72978063	1.00[AMR][1000 genomes]
rs7532503	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112788800-112812200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:112807800-112811800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:112808200-112815200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:112809400-112811200	Enhancers	Pancreas	Pancrea
5	chr1:112809400-112811600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:112809800-112811400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:112809800-112811400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:112810000-112811200	Enhancers	Fetal Muscle Leg	muscle
9	chr1:112810000-112811400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:112810000-112811400	Enhancers	Right Atrium	heart
11	chr1:112810000-112811400	Enhancers	HSMMtube	muscle
12	chr1:112810000-112811600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:112810000-112811600	Enhancers	Ovary	ovary
14	chr1:112810200-112811200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:112810200-112811200	Enhancers	Left Ventricle	heart
16	chr1:112810200-112811400	Enhancers	Spleen	Spleen
17	chr1:112810200-112811600	Enhancers	Adipose Nuclei	Adipose
18	chr1:112810200-112811600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:112810200-112811600	Enhancers	GM12878-XiMat	blood
20	chr1:112810600-112811400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:112810600-112811400	Enhancers	Placenta	Placenta
22	chr1:112810800-112811200	Enhancers	Osteobl	bone
23	chr1:112810800-112811600	Enhancers	Brain Substantia Nigra	brain
24	chr1:112811000-112811400	Enhancers	K562	blood
25	chr1:112811000-112812400	Weak transcription	Lung	lung

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